Graph of C. elegans Neuron Classes

Original structure of the database:

Connections between cells or cell classes are listed in 3 files:
Albertson_Fig
White_Fig
White_Table

Structure of our database:

name_neurons.txt: similar to the original name_neurons.txt of (1), with the following corrections:
- some classes miss from the original one, but appear in the files named above (e.g. G)
- some cells appear with a name in the files named above different from the original one (e.g. CEPshDL=CEPDL)
- some classes appear with a name in the files named above different from the original one (e.g. m1=M1)
- we put a # at the end of the corrected lines
ellista.txt: two classes are in a raw if there are any connections between them (with no look at the direction nor the type of the connection)
- we left the "-" or the "MUSCLE" classes out from the original database
- the number next to the pair of cells express the number of the found connections in the database
foxamok.txt: this text file contains the connection number (degree) of the classes, ordered by name foxamok_ordered.txt: contains the degree of the classes, decreasingly ordered by degree
matrixgyarto.py: the script which created "ellista.txt" from the original database (Ce_synapse)
foxamlalo.py: the script which created "foxamok.txt" and "foxamok_ordered.txt" from "ellista.txt"

All data are downloadable here:

c_elegans.tar.gz c_elegans.zip

References:

(1) Database of Synaptic Connectivity of C.elegans for Computation, Oshio,Iwasaki, Morita, Osana, Gomi, Akiyama, Omata, Oka, Kawamura, 2003
(2) The Pharynx of C. elegans, Albertson, Thomson, 1976
(3) C. elegans Synaptic Connectivity Data, Oshio, Morita, Osana, Oka, 1998
(4) The structure of the nervous system of the nematode Caenorhabditis elegans, White, Southgate, Thomson, Brenner, 1986

Eötvös Loránd Tudományegyetem PIT Group, Grolmusz, V., Hujter, B., Kisfaludi-Bak, S., Szalkai, B., Vásárhelyi, B., 2012